PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3467s0056.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GATA
Protein Properties Length: 366aa    MW: 40769.4 Da    PI: 9.6049
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3467s0056.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.12.7e-19221254134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  Cagra.3467s0056.1.p 221 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 254
                          *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004019.1E-18215266IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.61E-12218256No hitNo description
Gene3DG3DSA:3.30.50.103.3E-15219254IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.10E-14220252No hitNo description
PfamPF003205.2E-17221254IPR000679Zinc finger, GATA-type
PROSITE patternPS003440221246IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.44221251IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MDSNVHYTID LNNEDQPFFS SLGSSLHQNH HQQQHFHHQA SYNPSSSMSP YVSYFPFLID  60
SHQGQDDQVY VGYNNNTFHG VLDHTHLPQP LETNKFVSDG CSASSDQMVP KKETRLKLTI  120
KKKDNHDQDQ TNLPQFPTKG KTGTNTLKWI SSKVRLMKKK KANITTTDSN KQHVNNDQSS  180
NQSNLHGDHD HLKKISTNDQ YNIIVNQNGY DGSNDCVIRI CSDCNTTKTP LWRSGPRGPK  240
SLCNACGIRQ RKARRAAATA TATATTSAIS NISPPLLKKK MQNKNKRSNE VHNLSSPSAK  300
RVITVKETTS ARDSVLSSSS SSDKFYFDDL AILLSKSSAY QQVFPQDEKE AAILLMALSY  360
GMVHG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0494838e-44AL049483.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20B18 (ESSA project).
GenBankAL1615648e-44AL161564.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 64.
GenBankCP0026878e-44CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283991.10.0hypothetical protein CARUB_v10005113mg
SwissprotQ9SZI61e-133GAT22_ARATH; Putative GATA transcription factor 22
TrEMBLR0GJ600.0R0GJ60_9BRAS; Uncharacterized protein
STRINGBra019118.1-P1e-146(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21092675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.11e-131cytokinin-responsive gata factor 1